- MZmine3 is a mass spectrometry data analysis platform including LC-MS and GC-MS.
- Skyline is a software for Selected Reaction Monitoring (SRM) / Multiple Reaction Monitoring (MRM), Parallel Reaction Monitoring (PRM - Targeted MS/MS), Data Independent Acquisition (DIA/SWATH)
- ProteoWizard is an LC-MS software for proteomics.